9/1/15

God and Human Sexuality by Dave Miller, Ph.D.


https://apologeticspress.org/APContent.aspx?category=7&article=1185

God and Human Sexuality

by  Dave Miller, Ph.D.

Does God exist? Sufficient evidence exists to warrant the conclusion: “Yes, I know that God exists.” Has He spoken to us? Again, sufficient evidence exists to prove that the book we call the Bible is the inspired, infallible, inerrant, authoritative Word of God. Since God exists, and since He has given to us His divine will in written form, moral choices and human behavior are to be governed by that revealed will.
What is God’s will concerning human sexuality? That will was demonstrated originally in the creation of the first human beings: “Male and female created He them” (Genesis 1:27). God’s decision to create a female counterpart to the male was not coincidental. The female uniquely met three essential criteria: (1) “It’s not good for man to be alone” (Genesis 2:18); (2) a helper suitable to him was needed (Genesis 2:18,20); and (3) the human race was to be perpetuated through sexual union (Genesis 1:28). Both Jesus and Paul reiterated this same understanding (Matthew 19:4-6; 1 Corinthians 7:2). So the woman was: (a) the divine antidote to Adam’s loneliness; (b) a helper fit for him; and (c) the means of the propagation of the human race. Here we see the divine arrangement for the human species.
Not long after God set into motion the created order—which He had pronounced as “very good” (Genesis 1:31)—man began to tamper with the divine will, and altered God’s original intentions concerning human sexuality. Polygamy was introduced into the world by Lamech (Genesis 4:19). God could have created two women for Adam. But He did not. Rather, He made one man for one woman for life. That is the divine will.
The next recorded departure from the divine will regarding human sexuality was Abraham’s foolish scheme to allow his wife Sarah to be taken by Pharoah (Genesis 12:10-12). That incident was followed by the determination by Sarah to offer Hagar as the means by which an heir might be secured (Genesis 16:1-16). Both of these actions obviously were contrary to God’s ideal of healthy, normal sexual behavior.
Genesis 19 now comes into view:
Now the two angels came to Sodom in the evening, and Lot was sitting in the gate of Sodom. When Lot saw them, he rose to meet them, and he bowed himself with his face toward the ground. And he said, “Here now, my lords, please turn in to your servant’s house and spend the night, and wash your feet; then you may rise early and go on your way,” And they said, “No, but we will spend the night in the open square.” But he insisted strongly; so they turned in to him and entered his house. Then he made them a feast, and baked unleavened bread, and they ate. Now before they lay down, the men of the city, the men of Sodom, both young and old, all the people from every quarter, surrounded the house. And they called to Lot and said to him, “Where are the men who came to you tonight? Bring them out to us that we may know them carnally.” So Lot went out to them through the doorway, shut the door behind him, and said, “Please, my brethren, do not do so wickedly! See now, I have two daughters who have not known a man; please, let me bring them out to you, and you may do to them as you wish; only do nothing to these men, since this is the reason they have come under the shadow of my roof.” And they said, “Stand back!” Then they said, “This one came in to sojourn, and he keeps acting as a judge; now we will deal worse with you than with them.” So they pressed hard against the man Lot, and came near to break down the door. But the men reached out their hands and pulled Lot into the house with them, and shut the door. And they struck the men who were at the doorway of the house with blindness, both small and great, so that they became weary trying to find the door (Genesis 19:1-11, NKJV).
Moses already had described the spiritual condition of Sodom’s inhabitants as being “wicked and sinners against Jehovah exceedingly” (Genesis 13:13). God Himself stated that their sin was “great” and “grievous” (Genesis 18:20). The specific activity described in Genesis 19 involved the desire on the part of the males of Sodom to “know” Lot’s two visitors. The Hebrew term yada is used euphemistically to denote sexual intercourse (cf. Genesis 4:1; 19:8; Numbers 31:17, 35; Judges 11:39; 21:11).
Notice that the crime that was condemned in this passage was not the fact that the Sodomites were being violent and forcing someone to do something against his will (see Miller, 2002). Jude made that clear when he identified their sin as “giving themselves over to fornication and going after strange flesh” (vs. 7). Peter echoed the same thought:
[A]nd turning the cities of Sodom and Gomorrah into ashes, condemning them to destruction, making them an example to those who afterward would live ungodly; and delivered righteous Lot, who was oppressed with the filthy conduct of the wicked (for that righteous man, dwelling among them, tormented his righteous soul from day to day by seeing and hearing their lawless deeds)—then the Lord knows how to deliver the godly out of temptations and to reserve the unjust under punishment for day of judgment, and especially those who walk according to the flesh in the lust of uncleanness and despise authority. They are presumptuous, self-willed; they are not afraid to speak evil of dignitaries (2 Peter 2:6-10, NKJV; cf. Jeremiah 23:14).
The term “sodomy” has come into the English language because of the sexual activity practiced in Sodom. A standard English dictionary defines “sodomy” as “[a]ny of various forms of sexual intercourse held to be unnatural or abnormal, especially anal intercourse or bestiality” (American Heritage Dictionary, 2000, p. 1651). It surely is reminiscent of our day to observe that when Lot urged the sodomites not to do “so wickedly,” the men accused Lot of being judgemental (Genesis 19:9; cf. Deuteronomy 23:17-18).
In addition to the pre-Mosaic period of history, God made clear His will on this matter when He handed down the Law of Moses. In a chapter dealing almost exclusively with sexual regulations, His words are explicit and unmistakable.
You shall not lie with a male as with a woman. It is an abomination. Nor shall you mate with any beast, to defile yourself with it. Nor shall any woman stand before a beast to mate with it. It is perversion. Do not defile yourselves with any of these things; for by all these the nations are defiled, which I am casting out before you. For the land is defiled; therefore I visit the punishment of its iniquity upon it, and the land vomits out its inhabitants. You shall therefore keep My statutes and My judgments, and shall not commit any of these abominations, either any of your own nation or any stranger who sojourns among you (for all these abominations the men of the land have done, who were before you, and thus the land is defiled), lest the land vomit you out also when you defile it, as it vomited out the nations that were before you. For whoever commits any of these abominations, the persons who commit them shall be cut off from among their people. Therefore you shall keep My ordinance, so that you do not commit any of these abominable customs which were committed before you, and that you do not defile yourselves by them: I am the Lord your God (Leviticus 18:22-30, NKJV)…. If a man lies with a male as he lies with a woman, both of them have committed an abomination. They shall surely be put to death. Their blood shall be upon them (Leviticus 20:13, NKJV).
A person would need help to misunderstand these injunctions.
Another graphic account is given in Judges 19, during the period of the judges, which was a time of spiritual and moral depravity and decay—the “Dark Ages” of Jewish history. “Sons of Belial” (i.e., wicked scoundrels) surrounded a house where travelers had taken refuge for the night. As in Sodom, they desired to “know” the male guest (Judges 19:22). The host, like Lot, knew exactly what they meant, as is evident from the fact that, like Lot, he offered them a sexual alternative (which, of course, God did not approve). Their sexual desire was labeled as “wickedness,” “outrage,” “vileness,” “lewdness,” and “evil” (Judges 19:23,24; 20:3,6,10,12,13, NKJV).
During the period of the kings, Josiah instituted sweeping moral and religious reforms. These included tearing down the homes of the Sodomites (2 Kings 23:7).
The New Testament is equally definitive in its uncompromising and unquestioned condemnation of illicit sexual activity. Paul summarized the “unrighteous” and “ungodly” behavior of the Gentile nations and declared:
For this reason God gave them up to vile passions. For even their women exchanged the natural use for what is against nature. Likewise also the men, leaving the natural use of the woman, burned in their lust for one another, men with men committing what is shameful, and receiving in themselves the penalty of their error which was due. And even as they did not like to retain God in their knowledge, God gave them over to a debased mind, to do those things which are not fitting; being filled with all unrighteousness, sexual immorality, wickedness, covetousness, maliciousness; full of envy, murder, strife, deceit, evil-mindedness; they are whisperers, backbiters, haters of God, violent, proud, boasters, inventors of evil things, disobedient to parents, undiscerning, untrustworthy, unloving, unforgiving, unmerciful; who, knowing the righteous judgment of God, that those who practice such things are worthy of death, not only do the same but also approve of those who practice them (Romans 1:26-32, NKJV).
This passage uses Greek terms that linguistic scholars define as “forbidden desire,” “impurity,” “unnatural vice,” “shameful passions,” “not in accordance with nature,” and “individuals of the same sex being inflamed with sensual, sexual desire for each other” (Arndt and Gingrich, 1957, pp. 28,118,119,240,583,877). Not only is God displeased with those who participate in such behavior, but verse 32 indicates that He is equally displeased with those who are merely supportive of such conduct—though they themselves do not engage in the activity. To the Corinthian church, Paul asked:
Do you not know that the unrighteous will not inherit the kingdom of God? Do not be deceived. Neither fornicators, nor idolaters, nor adulterers, nor homosexuals, nor sodomites, nor thieves, nor covetous, nor drunkards, nor revilers, nor extortioners, will inherit the kingdom of God. And such were some of you. But you were washed, but you were sanctified, but you were justified in the name of the Lord Jesus and by the Spirit of our God (1 Corinthians 6:9-11, NKJV).
The Greek word translated “homosexual” is a metaphorical use of a term that literally means “soft” and, when referring to people, refers to males allowing themselves to be used sexually by other males. Again, lexicographers apply the term to the person who is a “catamite,” i.e., a male who submits his body to another male for unnatural lewdness, i.e., homosexually (Thayer, 1977, p. 387; Arndt and Gingrich, p. 489).
The term “sodomites,” (“abusers of themselves with mankind” in the KJV) is a translation of the term arsenokoitai. It comes from two words: arsein (a male) and koitei (a bed), and refers to one who engages in sex with a male as with a female (Thayer, p. 75). Paul used the same term when he wrote to Timothy, and identified some behaviors that are both “contrary to sound doctrine” and characteristic of the one who is not “a righteous man” (1 Timothy 1:9-10).
When Paul said, “such were some of you,” he proved not only that those involved may be forgiven, but that they can cease such activity. We are forced to conclude that sexual activity between persons of the same sex is not a matter of genetics; it is a behavioral phenomenon associated largely with environmental factors.
Illicit sex is just one more departure from God’s will that American civilization is facing. God identified all departures from His will pertaining to sexual intercourse as “fornication.” The underlying Greek term, porneia, is a broad term that covers every form of illicit sexual intercourse, including adultery, incest, bestiality, bigamy, polygamy, bisexuality, necrophilia, and more. Our sex-crazed society is so promiscuous, and so estranged from God’s view of human sexuality, that our public schools consider it appropriate to teach children to simply “take precautions” when they engage in sexual escapades outside of marriage. But God never encouraged people to practice “safe sex.” Rather, He instructed people to exercise self-control, self-discipline, and moral responsibility. The Bible teaches that we are not to be self-indulgent. We are to put restraints on ourselves, and control our sexual urges and desires according to God’s will.
Encouraging young people simply to “take precautions” only encourages additional illicit behavior. It encourages more promiscuity. It contributes to an increase—not a decrease—in the number of pregnancies, and sexually transmitted diseases. Despite several decades of inundating our schools with sex education, and the promotion of so-called “safe sex,” the statisticians inform us that in the next thirty days, 83,850 unwed girls will become pregnant in this country (“Teens in Crisis,” 2001, p. 1). The handling of the issue by the social liberal has not worked. In fact, the problem has greatly worsened.
The Bible definition of “safe sex” is sex that is confined to a divinely authorized, scriptural marriage. The depths to which our country has slumped morally is seen in the fact that it is legal for public school officials to distribute condoms to students, but it is illegal to distribute Bibles or to teach Bible principles. The time has come for our nation to wake up. The time has come to face the fact that freedom requires restraint. Rights require personal responsibility. People must take responsibility for their choices, and accept the consequences of their own actions. Paul declared, “flee fornication” (1 Corinthians 6:18). He did not say, “engage in ‘safe’ fornication!” There is no such thing as “safe” sin or “safe” immorality. God said a person must run away from it, resist it, and reject it. To a youth, Paul said, “Keep yourself pure” (1 Timothy 5:22). The writer of Hebrews insisted that the marriage bed is to be kept “undefiled.” “[F]ornicators and adulterers God will judge” (Hebrews 13:4). Paul said there should not be so much as a hint of sexual immorality among Christians (Ephesians 5:3).
Please understand: God loves all sinners—regardless of the specific sins they have committed. The faithful Christian will do the same. But it is imperative that we be about the business of alerting those who are engaged in sexual sin regarding God’s will, in an effort to “snatch them out of the fire” (Jude 23), and to “save a soul from death and cover a multitude of sins” (James 5:20).

CONCLUSION

Sexual sin undoubtedly will go down in history as one of the major contributors to the moral and spiritual deterioration, decline, and downfall of American society. One wonders how much longer such widespread unchastity can go on in our land before God will “visit the punishment of its iniquity upon it, and the land vomits out its inhabitants” (Leviticus 18:25). Every society in human history that has followed this course toward moral and spiritual depravity has eventually been destroyed by God. Indeed, in light of such moral confusion, our society cannot continue to survive indefinitely into the future—unless, of course, God is prepared to apologize to Sodom and Gomorrah.

REFERENCES

American Heritage Dictionary of the English Language (2000), (Boston, MA: Houghton Mifflin), fourth edition.
Arndt, William and F.W. Gingrich (1957), A Greek-English Lexicon of the New Testament and Other Early Christian Literature (Chicago, IL: University of Chicago Press).
Miller, Dave (2002), “Sodom—Inhospitality or Homosexuality?,” Reason & Revelation, 22:41-42, November.
Thayer, J.H. (1962 reprint), A Greek-English Lexicon of the New Testament (Grand Rapids, MI: Baker).
“Teens in Crisis” (2001), Teen Help (Las Vegas, NV: World Wide Association of Specialty Programs and Schools).

8/31/15

Cracking the Code—The Human Genome Project in Perspective [Part II] by Bert Thompson, Ph.D.

https://apologeticspress.org/APContent.aspx?category=9&article=206

Cracking the Code—The Human Genome Project in Perspective [Part II]

by  Bert Thompson, Ph.D.

[EDITOR’S NOTE: Part I of this two-part series appeared in the August issue. Part II follows below and continues, without introductory comments, where the first article ended. However, the reader may find it useful to have on hand the “Genetic Glossary,” since some terms in that glossary are employed here for the first time.]

ORIGIN OF THE GENETIC CODE

The nucleic acid-based genetic code exists. But whence has it come? Since the elucidation of the genetic code in the mid-1950s, materialists have suggested that those mythical parents, “father time” and “mother nature,” gave birth to the genetic code via purely chance processes. As Nobel laureate Jacques Monod put it: “Chance alone is the source of every innovation, of all creation in the biosphere.... All forms of life are the product of chance...” (1972, pp. 110,167). Such a view, however, ascribes to “chance” properties that it does not, and cannot, possess. Sproul, Gerstner, and Lindsley addressed this logical fallacy and concluded:
Chance is incapable of creating a single molecule, let alone an entire universe. Why not? Chance is no thing. It is not an entity. It has no being, no power, no force. It can effect nothing for it has no causal power within it (1984, p. 118).
Chance cannot create. And it certainly cannot create something as complex as the genetic code. Furthermore, as science writer Matt Ridley observed: “DNA is information, a message written in a code of chemicals” (1999, p. 13). And, as information scientist Werner Gitt correctly noted: “Coding systems are not created arbitrarily, but they are optimized according to criteria.... Devising a code is a creative mental process. Matter can be a carrier of codes, but it cannot generate codes” (1997, pp. 59,67, emp. added). Whence, then, has come the genetic code? What “creative mental process” imposed the information on it that it contains? In their textbook, The New Biology, evolutionists Robert Augros and George Stanciu wrote:
What cause is responsible for the origin of the genetic code and directs it to produce animal and plant species? It cannot be matter because of itself matter has no inclination to these forms.... There must be a cause apart from matter that is able to shape and direct matter. Is there anything in our experience like this? Yes, there is: our own minds. The statue’s form originates in the mind of the artist, who then subsequently shapes matter, in the appropriate way.... For the same reasons there must be a mind that directs and shapes matter in organic forms (1987, p. 191, emp. added).
In speaking of the origin of the genetic code, and the simultaneous appearance of the decoding mechanism that accompanies it, evolutionist Caryl Haskins lamented: “By a pre-Darwinian (or a skeptic of evolution after Darwin) this puzzle would surely have been interpreted as the most powerful sort of evidence for special creation” (1971, 59:305, emp. added, parenthetical comment in orig.). The late evolutionist Carl Sagan of Cornell University admitted:
The number of possible ways of putting nucleotides together in a chromosome is enormous. Thus a human being is an extraordinarily improbable object. Most of the 102.4x109 possible sequences of nucleotides would lead to complete biological malfunction (Sagan, 1997, 22:967, emp. added).
Sir Francis Crick therefore wrote:
An honest man, armed with all the knowledge available to us now, could only state that in some sense, the origin of life appears at the moment to be almost a miracle, so many are the conditions which would have had to have been satisfied to get it going (1981, p. 88, emp. added).
Wilder-Smith offered the following observation about the origin of the genetic code.
The almost unimaginable complexity of the information on the genetic code along with the simplicity of its concept (four letters made of simple chemical molecules), together with its extreme compactness, imply an inconceivably high intelligence behind it. Present-day information theory permits no other interpretation of the facts of the genetic code (1976, pp. 258-259, emp. added).
This is the very point that Gitt made in his 1997 book on information theory when he wrote: “The coding system used for living beings is optimal from an engineering standpoint. This fact strengthens the argument that it was a case of purposeful design rather than fortuitous chance” (p. 95, emp. added). British evolutionist Richard Dawkins once observed: “The more statistically improbable a thing is, the less we can believe that it just happened by blind chance. Superficially the obvious alternative to chance is an intelligent Designer” (1982, p. 130). I suggest, however, that since the genetic code “appears to be almost a miracle” which “implies an inconceivably high intelligence behind it,” then it hardly is “superficial” to believe that it must have had a designer—the Creator-God of the Universe.

DNA, GENES, AND CHROMOSOMES

In most organisms, the primary genetic material is DNA. [Some viruses, primarily retroviruses, contain only RNA (see Nicholl, 1994, pp. 9-10; Ridley, 1999, p. 9).] What is DNA, and how does it work? In his book, The Case Against Accident and Self-Organization, Dean Overman provided the following excellent summary [see Figures 1 and 2].
A DNA molecule is comprised of thousands of long chains of nucleotides (polynucleotides) each consisting of three parts. One part is the pentose or five carbon sugar known as deoxyribose. A second part is a phosphate group, and the third part is a nitrogen base of either adenine (A), guanine (G), cytosine (C) or thymine (T). Alternating sugar and phosphate molecules connect each nucleotide chain in a ladder type configuration coiled around a central axis in a twisted double spiral or helix. The two chains run in opposite directions with 10 nucleotides per turn of the helix. The rungs of the bases are pairs of either adenine and thymine (A-T) or cytosine with guanine (C-G). A relatively weak hydrogen bond connects these bases... (1997, p. 34).
Genes, then, are specific segments of DNA (although not all DNA assumes the form of genes; some resides in extranuclear organelles such as plasmids, and some is non-coding). Chromosomes—which consist of DNA and other material—are macromolecules composed of repeating nucleotides that serve as carriers for genes, with thousands of genes being aligned along each chromosome. [Not all human genes, however, are found on chromosomes; a few reside within mitochondria located in the cytoplasm; see Ridley, 1999, p. 9.] Each chromosome consists of a pair of long (roughly three feet), tightly coiled, double-stranded DNA molecules, with each chromosome possessing one long arm and one short arm separated by a middle “pinch point” known as a centromere.
Every living thing has a specified number of chromosomes in each somatic cell. A corn cell has 20; a mouse, 40; a gibbon, 44; and a human, 46. Germ cells in humans, however, have only 23 chromosomes each so that during the union of the male and female gametes, the total will be the standard human number of 46 (23 + 23). [Of these, 22 pairs are numbered in approximate order of size from the largest (#1) to the smallest (#22), while the remaining pair consists of the sex chromosomes: two large X chromosomes in women, one X and one small Y in men.] As a result, genes end up being inherited in pairs consisting of one portion from the father and one from the mother, thereby ensuring genetic diversity.


Nucleotide structure diagram
Figure 1 — The structure of a nucleotide. Circles represent carbon atoms. In DNA the sugar is deoxyribose, with a hydrogen atom at position X; in RNA the sugar is ribose, with a hydroxyl (OH) group at position X. In DNA, the base can be A,G,C, or T; in RNA, the base can be A,G,C, or U.
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An average gene consists of about 1,000 nucleotides [see Figure 1] that normally appear in triplets such as AGC or ATG (see Perloff, 1999, p. 72). While most triplets specify amino acid production, some function as a “stop” command, just as a telegram might contain “stop” to end a sentence. All living organisms—humans, animals, and plants—depend on this code for their existence. Furthermore, each gene is the blueprint the cell uses to assemble a protein that is composed of a long necklace of amino acids (with each protein consisting of a distinct sequence of those amino acids). [A typical protein contains approximately 300 amino acids (see Macer, 1990, p. 2).]
Thanks to the progress that has been made in both genetics and molecular biology, we now possess techniques by which it is possible to determine the exact chemical sequence of any gene from any organism. The genotype is the complete set of genes that the organism possesses—something determined at the time of conception for multicellular organisms. It is the same in all cells of an individual organism. The genotype of all cells derived from a particular cell will be the same, unless a mutation occurs. [It is estimated that 90% of all known gene mutations occur in autosomal chromosomes (as opposed to sex chromosomes—see Macer, 1990, p. 4).] For organisms that reproduce sexually, the genotype of each new individual will be different since the genes from the two parents are combined. The phenotype of an individual is determined by the constant interaction of their genotype and the environment.
The DNA molecule truly is amazing, but it still has certain built-in limits. As geneticist Richard Lewontin remarked: “DNA is a dead molecule, among the most nonreactive, chemically inert molecules in the living world” (2000, p. 141). Matt Ridley referred to DNA as “a helpless, passive piece of mathematics, which catalyses no chemical reactions” (1999, p. 17). What is the point of such statements? Jonathan Wells has explained:
Although molecular biology has demonstrated conclusively that DNA carries the genetic code for the amino acid sequences of proteins, this is not sufficient to specify a whole organism. Combining DNA with all the ingredients necessary for protein synthesis does not make a cell.... Molecular biology has shown that an organism’s DNA specifies the building materials. It turns out, however, that the assembly instructions are largely in other components of the cell, and that the floor plan has not yet been discovered. So there are clearly other factors involved in heredity and development besides DNA (1998, pp. 62,64).
[This information will become important in separating fact from fiction in the discussion below on the Human Genome Project.]
Strictly speaking, of course, DNA is not actually a self-replicating molecule. As Lewontin explained:
DNA has no power to reproduce itself. Rather it is produced out of elementary materials by a complex cellular machinery of proteins.... The newly manufactured DNA is certainly a copy of the old, and the dual structure of the DNA molecule provides a complementary template on which the copying process works...[but] no living molecule is self-reproducing (2000, p. 142, emp. in orig.).
DNA does replicate, however. And the process by which it does so is an enormously complex one with many different components that interact to ensure the faithful transfer of genetic information to the next generation. Biochemist Michael Behe noted:
A large number of parts have to work together to that end. In the absence of one or more of a number of the components, DNA replication is either halted completely or significantly compromised, and the cell either dies or becomes quite sick (1998, p. 185).
What, then, is involved in reproducing the DNA molecule so that it can be passed from cell to cell and generation to generation?
Parent and complementary strands of DNA during replication
Figure 2 — DNA shown in double-helix, parent-strand form (top), and during replication of two new complementary strands (bottom). Source: DOE Human Genome Program [on-line], http://www.ornl.gov/hgmis/
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Once the structure of DNA finally was elucidated, scientists discovered how, during cell division, the DNA is replicated to produce a genome for each new daughter cell. The secret lies in the pairing of the bases—A to T, and G to C. During the replication process, the two complementary strands of DNA “unzip” down the middle. A new strand then begins to form alongside each of the originals, laying in an A wherever there is an opposing T, a T where there is an A, a G to a C, and a C to a G. The end result is two new double-stranded portions of DNA that, in most instances, are identical to the originals in their base sequences [see Figure 2]. Ridley described the process by comparing the genetic material to a book.
The genome is a very clever book, because in the right conditions it can both photocopy itself and read itself. The photocopying is known as replication, and the reading as translation. Replication works because of an ingenious property of the four bases: A likes to pair with T, and G with C. So a single strand of DNA can copy itself by assembling a complementary strand with Ts opposite all the As, As opposite all the Ts, Cs opposite all the Gs and Gs opposite all the Cs. In fact, the usual state of DNA is the famous double helix of the original strand and its complementary pair intertwined.
To make a copy of the complementary strand therefore brings back the original text. So the sequence ACGT becomes TGCA in the copy, which transcribes back to ACGT in the copy of the copy. This enables DNA to replicate indefinitely, yet still contain the same information.
Translation is a little more complicated. First the text of a gene is transcribed into a copy by the same base-pairing process, but this time the copy is made not of DNA but of RNA, a very slightly different chemical.... This RNA copy, called the messenger RNA, is then edited....
The messenger is then befriended by a microscopic machine called a ribosome, itself made partly of RNA. The ribosome moves along the messenger, translating each three-letter codon in turn into one letter of a different alphabet, an alphabet of twenty different amino acids, each brought by a different version of a molecule called transfer RNA. Each amino acid is attached to the last to form a chain in the same order as the codons. When the whole message has been translated, the chain of amino acids folds itself up into a distinctive shape that depends on its sequence. It is now known as a protein.
Almost everything in the body, from hair to hormones, is either made of proteins or made by them. Every protein is a translated gene (1999, pp. 6,7,8, emp. in orig.).
Yes, the process described above is utterly amazing. But no less amazing is the fact that it takes place in a DNA fiber that is only two millionths of a millimeter thick (barely visible under an electron microscope). Yet the amount of information contained within it “is so immense in the case of human DNA that it would stretch from the North Pole to the equator if it was typed on paper, using standard letter sizes” (Gitt, 1997, p. 90). As Anderson observed: “If the tightly coiled DNA strands inside a single human adult were unwound and stretched out straight, they would cover the distance to the moon half a million times. Yet when coiled, all the strands could fit inside a teaspoon” (1980, p. 50).
The DNA molecule must be incredibly stable, since the genetic information stored within it may need to function in a living organism for up to a century or more. It also must be completely reproducible so that its complex informational content can be passed successfully from generation to generation. As it turns out, DNA does, in fact, possess each of these traits, and thereby fulfills the necessary and essential criteria of stability and replicability. Are we to be convinced, however, that all of this occurred merely by chance?

THE HUMAN GENOME PROJECT

Whenever the President of the United States and the Prime Minister of Great Britain call a news conference that is broadcast worldwide in order to discuss a scientific matter, it must be pretty heady stuff. What, exactly, is the Human Genome Project? Why has it generated such tremendous publicity of late? And is all the hoopla surrounding it justified—or even correct?
An organism’s genome is its total genetic content. [The phrase “nuclear genome” refers solely to the DNA within the nucleus; the phrase “human genome” refers to all of the DNA contained in an entire human (haploid) cell, rather than just that in the nucleus.] In the late 1980s, scientists began discussing the possibility of obtaining a detailed map and complete DNA sequence of the genome of a variety of organisms, including the bacterium Escherichia coli, the yeast Saccharomyces cerevisiae, the roundworm Caenorhabditis elegans, the fruit fly Drosophila melanogaster (all of which, by the way, had been completed by the end of 1999), wheat, rice, the mouse, and of course, Homo sapiens. [For an update on the progress regarding the sequencing of the genome of the mouse and other species, see Karow, 2000, 283[1]:53.]
The mere thought of mapping all the chromosomes and sequencing all the genes of even a “simple” living organism should be enough to send chills down the spine of every hard-working molecular biologist. After all, a bacterium can have 4 million nucleotide bases in its genetic repertoire, while more complicated organisms such as human beings can possess more than 3 billion. And, curiously, some amphibians and flowering plants have more than 10 times the number of nucleotide bases found in human beings (see Roth, 1998, p. 70; Avers, 1989, pp. 142-143; Fraser, et al., 1995, 270:397-403; Goffeau, 1995, 270:445-446). But, by the beginning of the year 2000, the genome sequences of more than 20 species had been published on the Internet, and the one-billionth base of human DNA had been sequenced (see Macer, 2000). Erika Check, writing in the August 14, 2000 issue of Newsweek, quoted Claire Fraser, head of the Institute for Genomic Research, who suggested that within the next year or so scientists will begin decoding the genomes of the top twenty human pathogens [disease-causing organisms] (136[7]:9). [In fact, in its July 13, 2000 issue, Nature reported that scientists in the country of Brazil had just completed the “first sequence of a free-living plant pathogen” and that their paper (published in that week’s issue of the journal) represented “a significant scientific milestone” (see Editorial, 2000a, 406:109; see also Simpson, A.J.G., et al., 2000, 406:151-156). Less than three weeks later, Nature announced in its August 3, 2000 issue that the genes of Vibrio cholerae, the microorganism that causes cholera, had been completely sequenced (see: Heidelberg, et al., 2000, 406:477-483; Check, 2000, 136[7]:9).]
In 1990, the Human Genome Project [or HGP; also sometimes referred to as the Human Genome Initiative] began (see Collins, 1997, p. 98). The name is a collective moniker for several projects that actually began in the late 1980s in several countries, following a decision by the United States Department of Energy [DOE] to: (a) create an ordered set of DNA segments from known chromosomal locations; (b) develop new computational methods for analyzing genetic map and DNA sequence data; and (3) develop new instruments and techniques for detecting and analyzing DNA (see Office of Technology Assessment, 1988). However, some in the biological community were a bit wary of DOE physicists “doing biology.” Thus, because the National Institutes of Health [NIH] is the major funder of biomedical research in America, its scientists signed on to join the project. [Francis Collins, M.D., Ph.D., is the head of the U.S. Human Genome Project.]
Shortly after the formation of the HGP in the United States, scientists from several foreign countries were invited to join in the effort, which resulted in the formation of the HGP international analogue—the Human Genome Organization [HUGO]. Included in the international effort were scientists from France, Great Britain, Japan, and elsewhere. In 1991 the Human Genome Diversity Project [HGDP] was begun, with a mandate to collect DNA samples for analysis from at least 25 unrelated individuals in 400 different populations around the world. Dr. Luigi Cavalli-Sforza, professor emeritus of genetics at Stanford University, heads the program (see Macer, 2000; Cavalli-Sforza, 2000, p. 69). In mid-1999, British science writer Matt Ridley wrote in his book, Genome:
Being able to read the genome will tell us more about...our nature and our minds than all the efforts of science to date. It will revolutionise anthropology, psychology, medicine, palaeontology and virtually every other science.... Some time in the year 2000, we shall probably have a rough first draft of the complete human genome. In just a few short years we will have moved from knowing almost nothing about our genes to knowing everything. I genuinely believe that we are living through the greatest intellectual moment in history. Bar none (p. 5, emp. added).
Ridley’s prediction has come true. The HGP now has achieved one of its main goals—producing a “rough first draft” of the human genome. Two groups—one governmental [the HGP] and one from corporate America [Celera Genomics, headed by its CEO, Dr. Craig Venter]—had been pursuing the goal of mapping the entire human genome independently of each other. [On January 10, 2000, for example, scientists at Celera announced they had sequences equal to over 90% of the human genome, and 97% of all genes, in their database (see Editorial, 2000b).] Eventually, however, the two groups agreed to work together. And work they did! On June 26, 2000, the announcement was made that, for all practical purposes, the mapping of the human genome was complete. In its cover story the following week (July 3), Time magazine reported on the meaning and importance of the announcement.
After more than a decade of dreaming, planning and heroic number crunching, both groups have deciphered essentially all the 3.1 billion biochemical “letters” of human DNA, the coded instructions for building and operating a fully functional human....
Armed with the genetic code, scientists can now start teasing out the secrets of human health and disease at the molecular level—secrets that will lead at the very least to a revolution in diagnosing and treating everything from Alzheimer’s to heart disease to cancer, and more (Golden and Lemonick, 2000, 156[1]:19-20).
The Human Genome Project is set up to proceed in two distinct stages, the first of which is that of “physical mapping.” This phase will examine short stretches of DNA in order to determine sequences along each chromosome as “landmarks” (somewhat like the mile markers found along U.S. interstate highways). These markers then will be of importance in finding exactly where, along each chromosome, particular genes reside. In the second phase of the project, various laboratories will examine an entire chromosome (or section of a chromosome, depending on its size) in order to determine the complete ordered sequence of nucleotides in its DNA. It is after this critical second phase, to use the words of Harvard’s Lewontin, “that the fun begins, for biological sense will have to be made, if possible, of the mind-numbing sequence of three billion A’s, T’s, C’s, and G’s” (2000, p. 162).
Truth be told, the processing of making “biological sense” out of the human genome already has begun in earnest. The December 2, 1999 issue of Nature announced, for example, that the first human chromosome (#22) had been completely sequenced (see Little, 2000, 402:467-468; Dunham, et al., 2000, 402:489-495; Donn, 1999). And in May 2000, the HGP announced that it not only had completed its own working draft of chromosome 22, but also had completed the sequencing of chromosome 21, which is involved with Down’s syndrome and several other diseases (see Brown, 2000, 283[1]:50-55; for a full account of the chromosome 21 story, see Scientific American’s Web site at http://www.sciam. com/explorations/2000051500chrom21).
But where, exactly, is the HGP now? Almost all of the genome data already are being used. As of June 2000, 85% of the human genome was available on the World Wide Web (see Regalado, 2000, 103[4]:97-98). The notion that science somehow will be transformed when we cross a mythical “finish line,” however, is wrong. The fact is, science already has been transformed. When Time’s writers chose the title “The Race Is Over!” for their cover story, they were correct—in the sense that everyone now can partake of the knowledge regarding the 3 billion DNA base pairs. That is the great achievement at this point in time. But there is more to it than that because there is much we still do not know, and much work yet to be done. Why is this the case? Wade Roush, writing in the May/June 2000 issue of Technology Review (shortly before the completion of the human genome project was announced), suggested:
...[W]e have only the foggiest picture of how our 100,000 genes interact to regulate one another’s expression and to direct protein production. Extrapolating from the genome to the whole organism is therefore akin to writing a history of New York City based on the phone directory. Another problem is that DNA, by itself, doesn’t produce or explain anything (2000, 103[3]:113).
In an interview in the July/August, 2000 issue of Technology Review, Eric Lander, who is the director of the Whitehead Institute for Biomedical Research/MIT Center for Genome Research (the world’s most productive academic gene sequencing facility and the flagship of the international Human Genome Project), admitted:
The truth is that the human genome is going to have all kinds of nasty little bits that are hard to fill in at the end: the middles of chromosomes, called the centromeres, the ends of chromosomes, called the telomeres, and so on. This is not like the transcontinental railroad, where at some point someone is going to nail the golden spike, and then and only then can you go cross-country. There is no golden nucleotide to be nailed into the double helix at the end....
The genome is a very elaborate program, and we don’t know how to read it. It’s as if we have some ancient computer code that was written...years ago and now we are trying to figure out what it does. I think what biologists are going to be doing for the next decade is figuring out the circuitry of the genome by monitoring how the 50,000 to 100,000 genes are turned on and off and how all the proteins come on and off in the cell (see Regalado, 2000, 103[4]:97-98).
The following report from Time accurately expressed Dr. Lander’s point.
HGP scientists may have decoded 97% of the genome’s letters—the remaining 3% are generally considered unsequenceable and irrelevant—but they know the order of only 53% of them. It’s as if they’ve got the pages in the so-called book of life in the proper order but with the letters on each page scrambled....
Celera, by contrast, has not only the pages but all the words and letters as well—though neither side can yet say what most of these words and letters mean.... [Craig] Venter points out that identifying the order of the letters in our genetic alphabet is just a first step. Still ahead for Celera as well as its competitors: the much more complicated task of telling what those letters mean, what they do and what can be done if the messages they spell out are in error—a prime cause of human disease and suffering (Golden and Lemonick, 2000, 156[1]:20-21).

“ERROR MESSAGES”—THOSE PESKY SNPs

As much as we might wish it were true, mapping the DNA sequence of a single human—or even many humans from populations around the world—will not produce an accurate map of a human genome. Why not? The reason has to do with what geneticists refer to as “single nucleotide polymorphisms” (known as SNPs—pronounced SNIPS). Although human DNA is “almost” the same from every person on Earth, it is not exactly the same. The fact is, there is an approximate 0.1% variation in the nucleotides that compose human DNA. Generally, such variation is caused by a single nucleotide—thus the name “single nucleotide” polymorphisms [poly—many, morphisms—forms]. The DNA being sequenced in the HGP actually is a composite of human tissue cell lines from several people. As Lemonick wrote in his Time article:
Scientists...are putting together databases of tissue samples to look for one-letter genetic differences.... Both the Human Genome Project and Celera are currently sequencing the genomes of many different people, of both sexes and all sorts of ethnic backgrounds, to get a better sense of where the SNPs are (2000, 156[1]:28).
Luigi Cavalli-Sforza, director of the Human Genome Diversity Project that is examining DNA samples from over 400 populations worldwide, has explained why accurate knowledge of SNPs is critical.
If we take the DNA from one sperm (or egg) and compare it to the DNA of another random one, we find that there is on average one different nucleotide pair every thousand nucleotide pairs. There are therefore at least three million differences between the DNA in one sperm or egg and the DNA in another. All these differences originated by mutation, a spontaneous error made while copying DNA, which most frequently involves the replacement of one nucleotide by another of the four.... New mutations are therefore transmitted from parents to children.... A change in DNA may cause a change in a protein... (2000, pp. 68,17, emp. added).
And a change in a protein within a living system can herald severe problems. Organisms contain thousands of proteins that most often are composed of 300 or more amino acids linked together in chain-like fashion. Substitution of even a single amino acid at a critical position can be lethal (see Roth, 1998, p. 69; Radman, 1988, 259[2]:40-46). In an article in Nature titled “The Book of Genes,” Peter Little explained why SNPs are so important within the context of the Human Genome Project.
There is a general consensus that SNPs are probably the cause of most common genetic disorders. We all carry many SNPs but if we are unlucky enough to carry the “wrong” set of changes, we are predisposed to one or other of the common disorders with a genetic component such as diabetes, heart disease, asthma, or cancers.... If knowledge of gene differences can be combined with an understanding of the richness of environmental influences, we will have the key to unlocking the cause of most of the common disorders that kill or otherwise cause suffering (1999, 402:467-468).
After reading, digesting, and pondering all of this information about the Human Genome Project, perhaps it will be easier to understand in a clearer fashion why writers like Newsweek’s Thomas Hayden have concluded:
Meanwhile, the benefits of genomic research—from predicting risk for hereditary disease to developing new drugs designed for an individual’s genetic makeup—are still years away... (2000, 136[1]:51).
One scientist, Richard K. Wilson of Washington University (a partner in the public consortium of the Human Genome Project), plainly admitted in an interview in the July 2000 issue of Scientific American:

For a long time, there was a big misconception that when the DNA sequencing was done, we’d have total enlightenment about who we are, why we get sick and why we get old. Well, total enlightenment is decades away (as quoted in Brown, 2000, 283[1]:50).
Maybe so. Nevertheless, that does not detract in any way from the success the Human Genome Project already has enjoyed.

CONCLUSION

Carl Sagan, one of the most visible popularizers of science in our generation, once observed:
...[T]he future holds the promise that man will be able to assemble nucleotides in any desired sequence to produce whatever characteristics of human beings are thought desirable, an awesome and disquieting prospect (1997, 22:967, emp. added).
Yes, it is indeed an “awesome and disquieting prospect.” Henry Greely, a medical bioethicist at Stanford University, commented on where this kind of thinking may lead when he wrote: “The problem is, we sanctify DNA. People seem to want to be eager to view their genome as their essence, instead of just molecules that pass on certain traits. In our secular culture, it’s almost taken the place of the soul” (as quoted in Kloehn and Salopek, 1997, p. C-1).
During an interview with Stanford geneticist David Cox for the August 14, 2000 issue of People magazine, reporter Giovanna Breu remarked: “Some worry that mapping the genome allows us to play God by manipulating life.” Dr. Cox, however, responded:
The genome gives us a list of what living things are made up of, but not how they go together and work. It provides one more piece of information that we can start using to make order out of our ignorance and help people to make better decisions in life. But...we just have the parts, not the entire instruction manual. I think God isn’t so stupid as to let anyone have that (2000, 54[7]:131).
While I, personally, might not have phrased my sentiments in exactly those words, it certainly is invigorating to see a scientist of Dr. Cox’s stature give credit where credit is due—to God—for the creation of the “book of life” to which we refer somewhat nonchalantly as the “human genome.” And it similarly is refreshing to be able to report that he is not the only scientist involved in the project who has acknowledged God as the Author of the intricate genetic code. At the June 26 press conference held jointly by the President of the United States and the Prime Minister of Great Britain, Dr. Francis Collins, who chairs the Human Genome Project from the National Institutes of Health, spoke in similar terms when he said:
Today, we deliver, ahead of schedule again, the most visible and spectacular milestone of all.... We have developed a map of overlapping fragments that includes 97 percent of the human genome, and we have sequenced 85 percent of this.... It’s a happy day for the world. It is humbling for me and awe-inspiring to realize that we have caught the first glimpse of our own instruction book, previously known only to God. What a profound responsibility it is to do this work (see Office of Technology Policy, 2000, emp. added). [NOTE: In an interview that appeared in the March issue of Discover magazine three months earlier, Dr. Collins publicly affirmed his personal faith in the God of the Bible, and commented on how grateful he was to be associated with the HGP as it uncovered some of the “mysteries of human biology”—see Glausiusz, 2000, 21[3]:22.]
A profound responsibility indeed! To actually be able to “peek inside” the biochemical code—“whose Builder and Maker is God”—is indeed “humbling and awe-inspiring.” And—regardless of how deep we probe or how intelligent we think we are—may it ever be so!

REFERENCES

Anderson, Bruce L. (1980), Let Us Make Man (Plainfield, NJ: Logos International).
Augros, Robert and George Stanciu (1987), The New Biology (Boston, MA: New Science Library).
Avers, C.J. (1989), Process and Pattern in Evolution (Oxford, England: Oxford University Press).
Behe, Michael J. (1998), “Intelligent Design Theory as a Tool for Analyzing Biochemical Systems,” Mere Creation, ed. William A. Dembski (Downers Grove, IL: InterVarsity Press).
Breu, Giovanna (2000), “The Code of Life” [Interview with geneticist David Cox, Codirector of the Human Genome Mapping Center at Stanford University], People, 54[7]:129-131, August 14.
Brown, Kathryn (2000), “The Human Genome Business Today,” Scientific American, 283[1]:50-55, July.
Cavalli-Sforza, Luigi (2000), Genes, Peoples, and Languages (New York: North Point Press).
Collins, Francis (1997), “The Human Genome Project,” Genetic Ethics: Do the Ends Justify the Genes?, ed. John F. Kilner, Rebecca D. Pentz, and Frank E. Young (Grand Rapids, MI: Eerdmans), pp. 95-103.
Check, Erika (2000), “Sound Smart About Sequencing,” Newsweek, 136[7]:9, August 14.
Crick, Francis (1981), Life Itself: Its Origin and Nature (New York: Simon and Schuster).
Dawkins, Richard (1982), “The Necessity of Darwinism,” New Scientist, 94:130-132, April 15.
Donn, Jeff (1999), “Chromosome Mapped,” [On-line], (ABC News), URL http://abcnews. go.com/sections/science/DailyNews/chromosome991201.html, December 1.
Dunham, I.N. Shimizu, B.A. Roe, S. Chissoe, et al. (1999), “The DNA Sequence of Human Chromosome 22,” Nature, 402:489-495, December 2.
“Editorial: Genome Sequencing for All,” (2000a), Nature, 406:109, July 13.
“Editorial: Private vs. Public Genomics,” (2000b), Nature, 403:117, January 13.
Fraser, C.M., J.D. Gocayne, O. White, M.D. Adams, R.A. Clayton, R.D. Fleischmann, C.J. Bult, A.R. Kerlavage, G. Sutton, J.M. Kelley, et. al. (1995), “The Minimal Gene Complement of Mycoplasma genitalium, Science, 270:397-403, October 20.
Gitt, Werner (1997), In the Beginning Was Information (Bielefeld, Germany: Christliche Literatur-Verbreitung).
Glausiuz, Josie (2000), “Genetic Code-Breaker” [Interview with Dr. Francis Collins, Head of the U.S. Human Genome Project], Discover, 21[3]:22, March.
Goffeau, André (1995), “Life with 482 Genes,” Science, 270:445-446, October 20.
Golden, Frederic and Michael Lemonick (2000), “The Race Is Over,” Time, 156[1]:19-23, July 3.
Haskins, Caryl P. (1971), “Advances and Challenges in Science in 1970,” American Scientist, 59:298-307, May/June.
Hayden, Thomas (2000), “A Genome Milestone,” Newsweek, 136[1]:51, July 3.
Heidelberg, John F., Jonathan A. Elsen, William C. Nelson, et al. (2000), “DNA Sequence of Both Chromosomes of the Cholera Pathogen Vibrio cholerae,” Nature, 406:477-483, August 3.
Karow, Julie (2000), “The ‘Other’ Genomes,” Scientific American, 283[1]:53, July.
Kloehn, Steve and Paul Salopek (1997), “Humanity Still at Heart, Soul of Cloning Issue: Scientists and Theologians Agree We Are Our Own Persons,” Chicago Tribune, C-1, March 2.
Lemonick, Michael (2000), “The Genome is Mapped. Now What?,” Time, 156[1]:24-29, July 3.
Lewontin, Richard (2000), It Ain’t Necessarily So: The Dream of the Human Genome and Other Illusions (New York: New York Review of Books).
Little, Peter (1999), “The Book of Genes,” Nature, 402:467-468, December 2.
Macer, Darryl R.J. (1990), Shaping Genes: Ethics, Law and Science of Using New Genetic Technology in Medicine and Agriculture [On-line], (Eubios Ethics Institute), URL http://www. biol.tsukuba.ac.jp/macer/SG.html.
Macer, Darryl R.J. (2000), “Introduction to the Genome Projects,“ Ethical Challenges as We Approach the End of the Human Genome Project, ed. Darryl R.J. Macer, [On-line], URL http://www.biol.tsukuba.ac.jp/macer/chgp/chgp2.html.
Monod, Jacques (1972), Chance and Necessity (London: Collins).
Nicholl, Desmond S.T. (1994), An Introduction to Genetic Engineering (Cambridge, England: Cambridge University Press).
Office of Technology Assessment—U.S. Congress (1988) Mapping Our Genes—The Genome Projects: How Big, How Fast? (Washington D.C.: United States Government Printing Office).
Office of Technology Policy—The White House (2000) Remarks by the President—The Entire Human Genome Project, [On-line], http://www.whitehouse.gov/WH/EOP/OSTP/html/00628_2.html.
Overman, Dean L. (1997), A Case Against Accident and Self-Organization (Lanham, MD: Rowman and Littlefield).
Perloff, James (1997), Tornado in a Junkyard (Arlington, MA: Refuge Books).
Radman, M. and R. Wagner (1988), “The High Fidelity of DNA Duplication,” Scientific American, 259[2]:40-46, February.
Regalado, Antonio (2000), “Riding the DNA Railroad,” Technology Review, 103[4]:94-98, July/August.
Ridley, Matt (1999), Genome: Autobiography of a Species in 23 Chapters (New York: HarperCollins).
Roth, Ariel A. (1998), Origins (Hagerstown, MD: Review and Herald Publishing Association).
Roush, Wade (2000), “Pages—Book Reviews” [“Genome, Schmenone,” A Review of Richard Lewontin’s book, It Ain’t Necessarily So], Technology Review, 103[3]:113, May/June.
Sagan, Carl (1997), “Life,” Encyclopaedia Britannica (New York: Encyclopaedia Britannica, Inc.), 22:964-981.
Simpson, A.J.G., F.C. Reinach, P. Arruda, et al. (2000), “The Genome Sequence of the Plant Pathogen Xylella fastidiosa,” Nature, 406:151-156, July 13.
Sproul, R.C., John Gerstner, and Arthur Lindsley (1984), Classical Apologetics (Grand Rapids, MI: Zondervan).
Wells, Jonathan (1998), “Unseating Naturalism: Recent Insights from Developmental Biology,” Mere Creation, ed. William A. Dembski (Downers Grove, IL: InterVarsity Press).
Wilder-Smith, A.E. (1976), A Basis for a New Biology (Einigen: Telos International).

From Mark Copeland... "GIVE ME THE BIBLE" How I Study The Bible

                          "GIVE ME THE BIBLE"

                         How I Study The Bible

INTRODUCTION

1. In this series ("Give Me The Bible"), we have covered...
   a. The Problem Of Biblical Illiteracy  e. Why I Obey The Bible
   b. Why I Read The Bible                f. Why I Study The Old Testament
   c. Why I Believe The Bible             g. How I Read The Bible
   d. Why I Love The Bible

2. In this final lesson I wish to share thoughts related to studying the Bible...
   a. To ensure proper comprehension
   b. To avoid misapplying the Bible

3. Not all Bible study proves profitable...
   a. We must handle the Word of God properly - 2Ti 2:15
   b. Some twist the Scriptures to their own destruction - 2Pe 3:16

[This is not a definitive treatment of Bible exegesis, but a few
thoughts that I keep in mind as I study the Bible.  First, in a positive
vein, with regards to...]

I. SEEKING COMPREHENSION

   A. BASIC STUDY PRINCIPLES...
      1. Study the Bible the way it was written
         a. The Word of God was revealed book by book; shouldn't we
            study it the same way?
         b. Many limit the bulk of their Bible study to topical studies
            or certain texts
         c. This increases the possibility of taking things out of context
         d. Truth requires considering all that God has revealed - cf.
            Ps 119:160
         e. Words, phrases, passages, should be studied in the context
            of their respective books
         f. "The Word of God well understood and religiously obeyed is
            the shortest route to spiritual perfection. And we must not
            select a few favorite passages to the exclusion of others.
            Nothing less than a whole Bible can make a whole Christian."
            - A. W. Tozer
         g. "The Bible is a harp with a thousand strings. Play on one to
            the exclusion of its relationship to the others, and you
            will develop discord. Play on all of them, keeping them in
            their places in the divine scale, and you will hear heavenly
            music all the time." - William P. White
      2. Study both privately and corporately
         a. Some study only when at church (corporately)
            1) Unprepared to truly benefit from their studies with others
            2) Unlikely to know when others may misinterpret or misapply
               the text
            3) "We have become so accustomed to hearing preachers or
               expositors, as important as that is, that many in the
               process have abandoned the grand privilege of personally
               hearing from God's Word daily." - Ravi Zacharias
         b. Some study only by themselves (privately)
            1) Not appreciating assistance from others  - e.g., Lk 24:44-45; Ac 8:30-31
            2) More likely to fall prey to misinterpretation or false teaching
      3. Study with the proper spirit
         a. With meekness, humility - Jm 1:21; Ps 25:9
         b. This why I believe the bulk of one's study should be in the
            form of daily devotional reading, accompanied with
            meditation and prayer - Ps 86:11; 119:33
         c. "Reading the Bible without meditating on it is like trying
            to eat without swallowing." - Anonymous

   B. BASIC STUDY TOOLS...
      1. Good translation
         a. Accurate, but readable
         b. Word for word translations preferred; thought for thought
            suitable for comparison
         c. Suggested:  ESV, NKJV, NASB (word for word); NLT (thought
            for thought)
      2. Readable layout
         a. Font size - suitable for reading (for me, that means at
            least 10 point!)
         b. Paper - minimal ghosting or bleed through (text visible from
            other side)
         c. Paragraph vs. verse by verse (personal preferences may vary)
         d. The layout of the text on paper should be easy on the eyes
            and comprehension
      3. Dictionaries, maps, study Bibles
         a. To look up the meaning of words, geographical information
         b. If we don't know the meaning of a word, we won't know the
            meaning of the text
         c. A good grasp of geographical information enhances Biblical
            understanding
         d. Beware of study Bibles with notes by one person, or a
            particular theological bias
         e. Suggested:  ESV Study Bible, NLT Study Bible
      4. Markup tools
         a. Many have found writing marginal notes, highlighting words
            or phrases helpful
         b. I like to highlight as I read, with a Zebra Eco Zebrite Double-Ended Highlighter
         c. For notes, many recommend this pen: Pigma Micron Pen #005 0.2mm

[Other study tools are certainly available, perhaps best recommended by
a mature Christian.  Now for some thoughts related to how we might avoid
misapplying the Bible...]

II. AVOIDING MISAPPLICATION

   A. BEWARE OF REACTIONARY THEOLOGY...
      1. This terminology is one of my own making
      2. Studying the Bible, but mostly in reaction to false teaching
      3. To prove others wrong, rather than to learn what is right for oneself
      4. Applying texts based on usefulness in making a religious argument
      5. We should study to learn and obey truth first, then to examine
         and expose error

   B. BEWARE OF CONCORDANCE THEOLOGY...
      1. Another terminology of my own making
      2. Studying the Bible with an overdependence of a concordance
      3. Assuming scriptures listed under a similar topic are
         necessarily related
      4. Applying texts without contextual considerations
      5. We should study the context first, then words in their
         particular context

   C. BEWARE OF CONFUSING THE COVENANTS...
      1. The Bible speaks of two covenants - Ga 4:24-26
         a. One first and old, the other second and new - He 8:7-13;9:15; 12:24
         b. The latter being better, coming of force when Jesus died
            - He 7:22; 8:6; 9:15-17
      2. Failure to distinguish leads to much confusion
         a. Many appeal to OT to justify worship and practice
         b. Christians live under the new covenant of our Lord and Savior
      3. Some examples:  Sabbath keeping, instrumental worship, separate priesthood

   D. BEWARE OF NOT SEEING THE FOREST FOR THE TREES...
      1. Developing doctrines based on a few select passages
      2. Often ignoring other passages which contradict their conclusions
      3. Some examples:  Calvinism, pre-millennialism, full preterism

   E. BEWARE OF ROOT FALLACIES...
      1. Supposing etymology determines meaning, that words are defined
         by their roots
      2. Not necessarily; words are defined by their usage, which may be
         quite different
      3. English example:  nice (from Latin, nescius, meaning ignorant!)
      4. Greek example:  church (ecclesia, called out) - properly
         defined as assembly, congregation
      5. We must be careful to define words as used in their historical setting

   F. BEWARE OF IGNORING DIVERSE MEANINGS...
      1. Assuming that a particular word or phrase means the same in
         every place
      2. Words often have more than one meaning
      3. English example:  run (has at least 28 different meanings!)
      4. Hebrew example:  spirit (has at least 9 different meanings)
      5. We must let the context define how a word or phrase is to be understood

   G. BEWARE OF NOT WAITING FOR THE CONCLUSION...
      1. Developing doctrines based on statements midway through the discussion
      2. Which may contradict the author's own concluding statements
      3. I see this especially involving Paul's lengthy and difficult
         arguments - cf. 2Pe 3:15-16
      4. Example:  Concluding that God predestines some to be lost, when
         God desires to show mercy on all - cf. Ro 9:15-24 with Ro 11:32;
         cf. 1Ti 2:4-6; 2Pe 3:9

   H. BEWARE OF MISHANDLING PROPHECIES...
      1. Interpreting prophecies literally when they may be fulfilled figuratively
      2. This was the mistake of the Jews in Jesus' day regarding the
         nature of the kingdom
      3. The apostles needed divine interpretation to understand OT
         prophecies - Lk 24:44-47
      4. We do well to let the NT interpret OT prophecies:, where the NT
         is silent on OT prophecies, we should be cautious and not
         dogmatic in our interpretations

CONCLUSION

1. For the person willing to study the Bible carefully, there is great
   reward... - Ps 1:1-3

2. "The Bible is...as necessary to spiritual life as breath is to
   natural life. There is nothing more essential to our lives than the
   Word of God." - Jack Hayford

I pray that this series of outlines will encourage you to let the Bible
transform your life!

Executable Outlines, Copyright © Mark A. Copeland, 2011

Pharaoh's Heart Weighed in the Balance by Garry K. Brantley, M.A., M.Div.


https://apologeticspress.org/APContent.aspx?category=13&article=1343

Pharaoh's Heart Weighed in the Balance

by  Garry K. Brantley, M.A., M.Div.

“Let My people go” was the demand that set the stage for a conflict that literally changed history. In a devastating series of plagues, Yahweh systematically humbled the contemptuous Egyptian monarch into compliance with His will. The theological impact of these plagues has been elucidated dramatically by Egyptian mythology, which demonstrates that these phenomena were not mere random, punitive acts recklessly performed by an angry God. To the contrary, they were polemical scourges carefully calculated to expose the impotence of Egypt’s so-called gods, whom the Egyptians believed were personified in nature (Exodus 12:12). In fact, scholars have detected a direct relationship between each plague and an Egyptian god, or some aspect of ancient Egypt’s religion (see White, 1975; Davis, 1971).
Egyptian mythology also produces a deeper meaning to another aspect of the Exodus narrative: the hardening of Pharaoh’s heart. The heart, according to Egyptian belief, was the seat of emotions, and represented the integrity and purity of an individual. According to the papyrus of Hu-nefer (1550-1090 B.C.), the jackal-headed god, Anubis, weighs this organ against a feather in the balance of truth. If the deceased’s heart weighed more than the feather, he or she would be judged a sinner and eaten by Amenit, the Devouress. If, however, the heart weighed no more than a feather, the deceased gained eternal life (see Pritchard, 1958, pp. 356-357; Currid, 1993).
Interestingly, one of the three words used to describe Pharaoh’s heart (all translated harden) in the Exodus narrative is kabed, which basically means “to be heavy or weighty” (Oswalt, 1980, 1:428). No doubt Pharaoh’s obstinacy was under consideration. But this word used to describe his heart has far-reaching implications in light of Egyptian mythology. It possibly suggests that, contrary to the Egyptian belief that Pharaoh was a divine being whose heart was the epitome of purity, and therefore light as a feather, the Egyptian monarch was a sinner unworthy of eternal life (Currid, 1993, 9[6]:51). This would serve, as did the plagues, to demonstrate Yahweh’s supremacy over the Egyptian god-king. Such information further suggests that the author of Exodus was intimately familiar with the nuances of the Egyptian religion. And, of course, Moses fits that bill perfectly.

REFERENCES

Davis, John J. (1971), Moses and the Gods of Egypt (Grand Rapids, MI: Baker).
Currid, John E. (1993), “Why Did God Harden Pharaoh’s Heart?,” Bible Review, 9[6]:46-51, December.
Oswalt, John (1980), “kabed,” Theological Wordbook of the Old Testament, ed. R.L. Harris, G.L. Archer, Jr., and B.K. Waltke (Chicago, IL: Moody), 1:426-428.
Pritchard, James (1958), The Ancient Near East: An Anthology of Texts and Pictures (Princeton, NJ: Princeton University Press).
White, W. (1975), “Plagues of Egypt,” The Zondervan Pictorial Encyclopedia of the Bible (Grand Rapids, MI: Zondervan), 4:805-807.

Higgs Boson—The "God Particle"? by Jeff Miller, Ph.D.


https://apologeticspress.org/APContent.aspx?category=12&article=3870

Higgs Boson—The "God Particle"?

by  Jeff Miller, Ph.D.


[NOTE—For updates to this article, see Higgs Boson—The "God Particle"? (Update) and Higgs Boson—The "God Particle"? (2nd Update)]
The Higgs Boson particle, presumptuously called the “God Particle” by some physicists, is a theoretical elementary particle that is predicted by the Standard Model of particle physics, but which has yet to be observed by physicists through experimentation. It is “thought to be the fundamental unit of matter” (“Has Quest for the Elusive…?” 2011). In theory, the particle could explain how other elementary particles have mass. But why do some call it the “God Particle”? To Big Bang-believers, the Higgs Boson is “a theoretical energy particle which many scientists believe helped give mass to the disparate matter spawned by the Big Bang” (“Scientists Close in…,” 2010). Big Bang theorists consider its existence “crucial to forming the cosmos after the Big Bang” (“Scientists…,” emp. added). Therefore, the particle is god-like to such sadly deluded individuals.
Recently, in an article titled, “Has Quest for the Elusive ‘God Particle’ Succeeded?,” Fox News reported on a “controversial rumor…based on a leaked internal note from physicists at the Large Hadron Collider (LHC)” that began circulating in the public eye (“Has Quest...”). The rumor suggests that the LHC, a particle accelerator located in Switzerland, may have run across proof of the Higgs’ existence. The leaked note “details an unexpected ‘bump’ in emissions that may be proof of the long-sought particle” (“Has Quest...”). Wait a minute. A “bump” could be proof of the Higgs Boson? Surely such an occurrence, which could be the result of any number of possibilities, would not constitute valid proof of anything to scientists. Although many scientists these days would consider such a vague incident enough proof to satisfy their longings, James Gillies, a spokesman for the European Organization for Nuclear Research responsible for building the LHC, admitted that “the leaked note faces several layers of scrutiny before it could be submitted for publication [in a scholarly scientific publication—JM].” He explains: “Things such as this show up quite frequently in the course of analysis…. It’s way too soon to get excited, I’m afraid. It’s not the physics find of the millennium, unfortunately” (“Has Quest...,” emp. added). So, atheistic evolution still stands as scientifically impossible.
As stated above, evolutionists consider the existence of the Higgs Boson “crucial to forming the cosmos after the Big Bang” (“Scientists…,” emp. added). Notice that without the existence of this theoretical particle, Big Bang theorists recognize that the Universe could not even form after the Big Bang theoretically occurred. Its existence would not prove that the Universe did form in the manner suggested by Big Bang Theory. Its existence would not even prove that the Universe could form after a hypothesized Big Bang occurred. Further, its existence would not prove that the Big Bang itself could occur at all. Its existence would not prove that matter could exist forever or pop into existence out of nothing, one of which must be true in order for the Big Bang to even get started. And its existence would certainly not prove that the scientific laws governing the Universe could write themselves into existence. However, without the existence of the particle, theorists know the Big Bang could not happen. Thus, discovery of its existence would not prove anything in the end, but only allow evolutionists to cross one of the many chasms that stand in the way of their theory even being considered a remote possibility. In other words, the Big Bang has not even reached square one in the realm of proof. It still lies firmly in the realm of impossibility. Bottom line: the Creation model still stands as the most logical explanation for the origin of the Universe—the model that matches the scientific evidence.

REFERENCES

“Has Quest for the Elusive ‘God Particle’ Succeeded?” (2011), Fox News, April 25, http://www.foxnews.com/scitech/2011/04/25/quest-elusive-god-particle-succeeded/?test=faces.
“Scientists Close in on God Particle” (2010), Fox News, July 27, http://www.foxnews.com/scitech/2010/07/27/scientists-closing-god-particle/.

Cracking the Code—The Human Genome Project in Perspective [Part II] by Bert Thompson, Ph.D.


https://apologeticspress.org/APContent.aspx?category=9&article=206

Cracking the Code—The Human Genome Project in Perspective [Part II]

by  Bert Thompson, Ph.D.

[EDITOR’S NOTE: Part I of this two-part series appeared in the August issue. Part II follows below and continues, without introductory comments, where the first article ended. However, the reader may find it useful to have on hand the “Genetic Glossary,” since some terms in that glossary are employed here for the first time.]

ORIGIN OF THE GENETIC CODE

The nucleic acid-based genetic code exists. But whence has it come? Since the elucidation of the genetic code in the mid-1950s, materialists have suggested that those mythical parents, “father time” and “mother nature,” gave birth to the genetic code via purely chance processes. As Nobel laureate Jacques Monod put it: “Chance alone is the source of every innovation, of all creation in the biosphere.... All forms of life are the product of chance...” (1972, pp. 110,167). Such a view, however, ascribes to “chance” properties that it does not, and cannot, possess. Sproul, Gerstner, and Lindsley addressed this logical fallacy and concluded:
Chance is incapable of creating a single molecule, let alone an entire universe. Why not? Chance is no thing. It is not an entity. It has no being, no power, no force. It can effect nothing for it has no causal power within it (1984, p. 118).
Chance cannot create. And it certainly cannot create something as complex as the genetic code. Furthermore, as science writer Matt Ridley observed: “DNA is information, a message written in a code of chemicals” (1999, p. 13). And, as information scientist Werner Gitt correctly noted: “Coding systems are not created arbitrarily, but they are optimized according to criteria.... Devising a code is a creative mental process. Matter can be a carrier of codes, but it cannot generate codes” (1997, pp. 59,67, emp. added). Whence, then, has come the genetic code? What “creative mental process” imposed the information on it that it contains? In their textbook, The New Biology, evolutionists Robert Augros and George Stanciu wrote:
What cause is responsible for the origin of the genetic code and directs it to produce animal and plant species? It cannot be matter because of itself matter has no inclination to these forms.... There must be a cause apart from matter that is able to shape and direct matter. Is there anything in our experience like this? Yes, there is: our own minds. The statue’s form originates in the mind of the artist, who then subsequently shapes matter, in the appropriate way.... For the same reasons there must be a mind that directs and shapes matter in organic forms (1987, p. 191, emp. added).
In speaking of the origin of the genetic code, and the simultaneous appearance of the decoding mechanism that accompanies it, evolutionist Caryl Haskins lamented: “By a pre-Darwinian (or a skeptic of evolution after Darwin) this puzzle would surely have been interpreted as the most powerful sort of evidence for special creation” (1971, 59:305, emp. added, parenthetical comment in orig.). The late evolutionist Carl Sagan of Cornell University admitted:
The number of possible ways of putting nucleotides together in a chromosome is enormous. Thus a human being is an extraordinarily improbable object. Most of the 102.4x109 possible sequences of nucleotides would lead to complete biological malfunction (Sagan, 1997, 22:967, emp. added).
Sir Francis Crick therefore wrote:
An honest man, armed with all the knowledge available to us now, could only state that in some sense, the origin of life appears at the moment to be almost a miracle, so many are the conditions which would have had to have been satisfied to get it going (1981, p. 88, emp. added).
Wilder-Smith offered the following observation about the origin of the genetic code.
The almost unimaginable complexity of the information on the genetic code along with the simplicity of its concept (four letters made of simple chemical molecules), together with its extreme compactness, imply an inconceivably high intelligence behind it. Present-day information theory permits no other interpretation of the facts of the genetic code (1976, pp. 258-259, emp. added).
This is the very point that Gitt made in his 1997 book on information theory when he wrote: “The coding system used for living beings is optimal from an engineering standpoint. This fact strengthens the argument that it was a case of purposeful design rather than fortuitous chance” (p. 95, emp. added). British evolutionist Richard Dawkins once observed: “The more statistically improbable a thing is, the less we can believe that it just happened by blind chance. Superficially the obvious alternative to chance is an intelligent Designer” (1982, p. 130). I suggest, however, that since the genetic code “appears to be almost a miracle” which “implies an inconceivably high intelligence behind it,” then it hardly is “superficial” to believe that it must have had a designer—the Creator-God of the Universe.

DNA, GENES, AND CHROMOSOMES

In most organisms, the primary genetic material is DNA. [Some viruses, primarily retroviruses, contain only RNA (see Nicholl, 1994, pp. 9-10; Ridley, 1999, p. 9).] What is DNA, and how does it work? In his book, The Case Against Accident and Self-Organization, Dean Overman provided the following excellent summary [see Figures 1 and 2].
A DNA molecule is comprised of thousands of long chains of nucleotides (polynucleotides) each consisting of three parts. One part is the pentose or five carbon sugar known as deoxyribose. A second part is a phosphate group, and the third part is a nitrogen base of either adenine (A), guanine (G), cytosine (C) or thymine (T). Alternating sugar and phosphate molecules connect each nucleotide chain in a ladder type configuration coiled around a central axis in a twisted double spiral or helix. The two chains run in opposite directions with 10 nucleotides per turn of the helix. The rungs of the bases are pairs of either adenine and thymine (A-T) or cytosine with guanine (C-G). A relatively weak hydrogen bond connects these bases... (1997, p. 34).
Genes, then, are specific segments of DNA (although not all DNA assumes the form of genes; some resides in extranuclear organelles such as plasmids, and some is non-coding). Chromosomes—which consist of DNA and other material—are macromolecules composed of repeating nucleotides that serve as carriers for genes, with thousands of genes being aligned along each chromosome. [Not all human genes, however, are found on chromosomes; a few reside within mitochondria located in the cytoplasm; see Ridley, 1999, p. 9.] Each chromosome consists of a pair of long (roughly three feet), tightly coiled, double-stranded DNA molecules, with each chromosome possessing one long arm and one short arm separated by a middle “pinch point” known as a centromere.
Every living thing has a specified number of chromosomes in each somatic cell. A corn cell has 20; a mouse, 40; a gibbon, 44; and a human, 46. Germ cells in humans, however, have only 23 chromosomes each so that during the union of the male and female gametes, the total will be the standard human number of 46 (23 + 23). [Of these, 22 pairs are numbered in approximate order of size from the largest (#1) to the smallest (#22), while the remaining pair consists of the sex chromosomes: two large X chromosomes in women, one X and one small Y in men.] As a result, genes end up being inherited in pairs consisting of one portion from the father and one from the mother, thereby ensuring genetic diversity.


Nucleotide structure diagram
Figure 1 — The structure of a nucleotide. Circles represent carbon atoms. In DNA the sugar is deoxyribose, with a hydrogen atom at position X; in RNA the sugar is ribose, with a hydroxyl (OH) group at position X. In DNA, the base can be A,G,C, or T; in RNA, the base can be A,G,C, or U.
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An average gene consists of about 1,000 nucleotides [see Figure 1] that normally appear in triplets such as AGC or ATG (see Perloff, 1999, p. 72). While most triplets specify amino acid production, some function as a “stop” command, just as a telegram might contain “stop” to end a sentence. All living organisms—humans, animals, and plants—depend on this code for their existence. Furthermore, each gene is the blueprint the cell uses to assemble a protein that is composed of a long necklace of amino acids (with each protein consisting of a distinct sequence of those amino acids). [A typical protein contains approximately 300 amino acids (see Macer, 1990, p. 2).]
Thanks to the progress that has been made in both genetics and molecular biology, we now possess techniques by which it is possible to determine the exact chemical sequence of any gene from any organism. The genotype is the complete set of genes that the organism possesses—something determined at the time of conception for multicellular organisms. It is the same in all cells of an individual organism. The genotype of all cells derived from a particular cell will be the same, unless a mutation occurs. [It is estimated that 90% of all known gene mutations occur in autosomal chromosomes (as opposed to sex chromosomes—see Macer, 1990, p. 4).] For organisms that reproduce sexually, the genotype of each new individual will be different since the genes from the two parents are combined. The phenotype of an individual is determined by the constant interaction of their genotype and the environment.
The DNA molecule truly is amazing, but it still has certain built-in limits. As geneticist Richard Lewontin remarked: “DNA is a dead molecule, among the most nonreactive, chemically inert molecules in the living world” (2000, p. 141). Matt Ridley referred to DNA as “a helpless, passive piece of mathematics, which catalyses no chemical reactions” (1999, p. 17). What is the point of such statements? Jonathan Wells has explained:
Although molecular biology has demonstrated conclusively that DNA carries the genetic code for the amino acid sequences of proteins, this is not sufficient to specify a whole organism. Combining DNA with all the ingredients necessary for protein synthesis does not make a cell.... Molecular biology has shown that an organism’s DNA specifies the building materials. It turns out, however, that the assembly instructions are largely in other components of the cell, and that the floor plan has not yet been discovered. So there are clearly other factors involved in heredity and development besides DNA (1998, pp. 62,64).
[This information will become important in separating fact from fiction in the discussion below on the Human Genome Project.]
Strictly speaking, of course, DNA is not actually a self-replicating molecule. As Lewontin explained:
DNA has no power to reproduce itself. Rather it is produced out of elementary materials by a complex cellular machinery of proteins.... The newly manufactured DNA is certainly a copy of the old, and the dual structure of the DNA molecule provides a complementary template on which the copying process works...[but] no living molecule is self-reproducing (2000, p. 142, emp. in orig.).
DNA does replicate, however. And the process by which it does so is an enormously complex one with many different components that interact to ensure the faithful transfer of genetic information to the next generation. Biochemist Michael Behe noted:
A large number of parts have to work together to that end. In the absence of one or more of a number of the components, DNA replication is either halted completely or significantly compromised, and the cell either dies or becomes quite sick (1998, p. 185).
What, then, is involved in reproducing the DNA molecule so that it can be passed from cell to cell and generation to generation?
Parent and complementary strands of DNA during replication
Figure 2 — DNA shown in double-helix, parent-strand form (top), and during replication of two new complementary strands (bottom). Source: DOE Human Genome Program [on-line], http://www.ornl.gov/hgmis/
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Once the structure of DNA finally was elucidated, scientists discovered how, during cell division, the DNA is replicated to produce a genome for each new daughter cell. The secret lies in the pairing of the bases—A to T, and G to C. During the replication process, the two complementary strands of DNA “unzip” down the middle. A new strand then begins to form alongside each of the originals, laying in an A wherever there is an opposing T, a T where there is an A, a G to a C, and a C to a G. The end result is two new double-stranded portions of DNA that, in most instances, are identical to the originals in their base sequences [see Figure 2]. Ridley described the process by comparing the genetic material to a book.
The genome is a very clever book, because in the right conditions it can both photocopy itself and read itself. The photocopying is known as replication, and the reading as translation. Replication works because of an ingenious property of the four bases: A likes to pair with T, and G with C. So a single strand of DNA can copy itself by assembling a complementary strand with Ts opposite all the As, As opposite all the Ts, Cs opposite all the Gs and Gs opposite all the Cs. In fact, the usual state of DNA is the famous double helix of the original strand and its complementary pair intertwined.
To make a copy of the complementary strand therefore brings back the original text. So the sequence ACGT becomes TGCA in the copy, which transcribes back to ACGT in the copy of the copy. This enables DNA to replicate indefinitely, yet still contain the same information.
Translation is a little more complicated. First the text of a gene is transcribed into a copy by the same base-pairing process, but this time the copy is made not of DNA but of RNA, a very slightly different chemical.... This RNA copy, called the messenger RNA, is then edited....
The messenger is then befriended by a microscopic machine called a ribosome, itself made partly of RNA. The ribosome moves along the messenger, translating each three-letter codon in turn into one letter of a different alphabet, an alphabet of twenty different amino acids, each brought by a different version of a molecule called transfer RNA. Each amino acid is attached to the last to form a chain in the same order as the codons. When the whole message has been translated, the chain of amino acids folds itself up into a distinctive shape that depends on its sequence. It is now known as a protein.
Almost everything in the body, from hair to hormones, is either made of proteins or made by them. Every protein is a translated gene (1999, pp. 6,7,8, emp. in orig.).
Yes, the process described above is utterly amazing. But no less amazing is the fact that it takes place in a DNA fiber that is only two millionths of a millimeter thick (barely visible under an electron microscope). Yet the amount of information contained within it “is so immense in the case of human DNA that it would stretch from the North Pole to the equator if it was typed on paper, using standard letter sizes” (Gitt, 1997, p. 90). As Anderson observed: “If the tightly coiled DNA strands inside a single human adult were unwound and stretched out straight, they would cover the distance to the moon half a million times. Yet when coiled, all the strands could fit inside a teaspoon” (1980, p. 50).
The DNA molecule must be incredibly stable, since the genetic information stored within it may need to function in a living organism for up to a century or more. It also must be completely reproducible so that its complex informational content can be passed successfully from generation to generation. As it turns out, DNA does, in fact, possess each of these traits, and thereby fulfills the necessary and essential criteria of stability and replicability. Are we to be convinced, however, that all of this occurred merely by chance?

THE HUMAN GENOME PROJECT

Whenever the President of the United States and the Prime Minister of Great Britain call a news conference that is broadcast worldwide in order to discuss a scientific matter, it must be pretty heady stuff. What, exactly, is the Human Genome Project? Why has it generated such tremendous publicity of late? And is all the hoopla surrounding it justified—or even correct?
An organism’s genome is its total genetic content. [The phrase “nuclear genome” refers solely to the DNA within the nucleus; the phrase “human genome” refers to all of the DNA contained in an entire human (haploid) cell, rather than just that in the nucleus.] In the late 1980s, scientists began discussing the possibility of obtaining a detailed map and complete DNA sequence of the genome of a variety of organisms, including the bacterium Escherichia coli, the yeast Saccharomyces cerevisiae, the roundworm Caenorhabditis elegans, the fruit fly Drosophila melanogaster (all of which, by the way, had been completed by the end of 1999), wheat, rice, the mouse, and of course, Homo sapiens. [For an update on the progress regarding the sequencing of the genome of the mouse and other species, see Karow, 2000, 283[1]:53.]
The mere thought of mapping all the chromosomes and sequencing all the genes of even a “simple” living organism should be enough to send chills down the spine of every hard-working molecular biologist. After all, a bacterium can have 4 million nucleotide bases in its genetic repertoire, while more complicated organisms such as human beings can possess more than 3 billion. And, curiously, some amphibians and flowering plants have more than 10 times the number of nucleotide bases found in human beings (see Roth, 1998, p. 70; Avers, 1989, pp. 142-143; Fraser, et al., 1995, 270:397-403; Goffeau, 1995, 270:445-446). But, by the beginning of the year 2000, the genome sequences of more than 20 species had been published on the Internet, and the one-billionth base of human DNA had been sequenced (see Macer, 2000). Erika Check, writing in the August 14, 2000 issue of Newsweek, quoted Claire Fraser, head of the Institute for Genomic Research, who suggested that within the next year or so scientists will begin decoding the genomes of the top twenty human pathogens [disease-causing organisms] (136[7]:9). [In fact, in its July 13, 2000 issue, Nature reported that scientists in the country of Brazil had just completed the “first sequence of a free-living plant pathogen” and that their paper (published in that week’s issue of the journal) represented “a significant scientific milestone” (see Editorial, 2000a, 406:109; see also Simpson, A.J.G., et al., 2000, 406:151-156). Less than three weeks later, Nature announced in its August 3, 2000 issue that the genes of Vibrio cholerae, the microorganism that causes cholera, had been completely sequenced (see: Heidelberg, et al., 2000, 406:477-483; Check, 2000, 136[7]:9).]
In 1990, the Human Genome Project [or HGP; also sometimes referred to as the Human Genome Initiative] began (see Collins, 1997, p. 98). The name is a collective moniker for several projects that actually began in the late 1980s in several countries, following a decision by the United States Department of Energy [DOE] to: (a) create an ordered set of DNA segments from known chromosomal locations; (b) develop new computational methods for analyzing genetic map and DNA sequence data; and (3) develop new instruments and techniques for detecting and analyzing DNA (see Office of Technology Assessment, 1988). However, some in the biological community were a bit wary of DOE physicists “doing biology.” Thus, because the National Institutes of Health [NIH] is the major funder of biomedical research in America, its scientists signed on to join the project. [Francis Collins, M.D., Ph.D., is the head of the U.S. Human Genome Project.]
Shortly after the formation of the HGP in the United States, scientists from several foreign countries were invited to join in the effort, which resulted in the formation of the HGP international analogue—the Human Genome Organization [HUGO]. Included in the international effort were scientists from France, Great Britain, Japan, and elsewhere. In 1991 the Human Genome Diversity Project [HGDP] was begun, with a mandate to collect DNA samples for analysis from at least 25 unrelated individuals in 400 different populations around the world. Dr. Luigi Cavalli-Sforza, professor emeritus of genetics at Stanford University, heads the program (see Macer, 2000; Cavalli-Sforza, 2000, p. 69). In mid-1999, British science writer Matt Ridley wrote in his book, Genome:
Being able to read the genome will tell us more about...our nature and our minds than all the efforts of science to date. It will revolutionise anthropology, psychology, medicine, palaeontology and virtually every other science.... Some time in the year 2000, we shall probably have a rough first draft of the complete human genome. In just a few short years we will have moved from knowing almost nothing about our genes to knowing everything. I genuinely believe that we are living through the greatest intellectual moment in history. Bar none (p. 5, emp. added).
Ridley’s prediction has come true. The HGP now has achieved one of its main goals—producing a “rough first draft” of the human genome. Two groups—one governmental [the HGP] and one from corporate America [Celera Genomics, headed by its CEO, Dr. Craig Venter]—had been pursuing the goal of mapping the entire human genome independently of each other. [On January 10, 2000, for example, scientists at Celera announced they had sequences equal to over 90% of the human genome, and 97% of all genes, in their database (see Editorial, 2000b).] Eventually, however, the two groups agreed to work together. And work they did! On June 26, 2000, the announcement was made that, for all practical purposes, the mapping of the human genome was complete. In its cover story the following week (July 3), Time magazine reported on the meaning and importance of the announcement.
After more than a decade of dreaming, planning and heroic number crunching, both groups have deciphered essentially all the 3.1 billion biochemical “letters” of human DNA, the coded instructions for building and operating a fully functional human....
Armed with the genetic code, scientists can now start teasing out the secrets of human health and disease at the molecular level—secrets that will lead at the very least to a revolution in diagnosing and treating everything from Alzheimer’s to heart disease to cancer, and more (Golden and Lemonick, 2000, 156[1]:19-20).
The Human Genome Project is set up to proceed in two distinct stages, the first of which is that of “physical mapping.” This phase will examine short stretches of DNA in order to determine sequences along each chromosome as “landmarks” (somewhat like the mile markers found along U.S. interstate highways). These markers then will be of importance in finding exactly where, along each chromosome, particular genes reside. In the second phase of the project, various laboratories will examine an entire chromosome (or section of a chromosome, depending on its size) in order to determine the complete ordered sequence of nucleotides in its DNA. It is after this critical second phase, to use the words of Harvard’s Lewontin, “that the fun begins, for biological sense will have to be made, if possible, of the mind-numbing sequence of three billion A’s, T’s, C’s, and G’s” (2000, p. 162).
Truth be told, the processing of making “biological sense” out of the human genome already has begun in earnest. The December 2, 1999 issue of Nature announced, for example, that the first human chromosome (#22) had been completely sequenced (see Little, 2000, 402:467-468; Dunham, et al., 2000, 402:489-495; Donn, 1999). And in May 2000, the HGP announced that it not only had completed its own working draft of chromosome 22, but also had completed the sequencing of chromosome 21, which is involved with Down’s syndrome and several other diseases (see Brown, 2000, 283[1]:50-55; for a full account of the chromosome 21 story, see Scientific American’s Web site at http://www.sciam. com/explorations/2000051500chrom21).
But where, exactly, is the HGP now? Almost all of the genome data already are being used. As of June 2000, 85% of the human genome was available on the World Wide Web (see Regalado, 2000, 103[4]:97-98). The notion that science somehow will be transformed when we cross a mythical “finish line,” however, is wrong. The fact is, science already has been transformed. When Time’s writers chose the title “The Race Is Over!” for their cover story, they were correct—in the sense that everyone now can partake of the knowledge regarding the 3 billion DNA base pairs. That is the great achievement at this point in time. But there is more to it than that because there is much we still do not know, and much work yet to be done. Why is this the case? Wade Roush, writing in the May/June 2000 issue of Technology Review (shortly before the completion of the human genome project was announced), suggested:
...[W]e have only the foggiest picture of how our 100,000 genes interact to regulate one another’s expression and to direct protein production. Extrapolating from the genome to the whole organism is therefore akin to writing a history of New York City based on the phone directory. Another problem is that DNA, by itself, doesn’t produce or explain anything (2000, 103[3]:113).
In an interview in the July/August, 2000 issue of Technology Review, Eric Lander, who is the director of the Whitehead Institute for Biomedical Research/MIT Center for Genome Research (the world’s most productive academic gene sequencing facility and the flagship of the international Human Genome Project), admitted:
The truth is that the human genome is going to have all kinds of nasty little bits that are hard to fill in at the end: the middles of chromosomes, called the centromeres, the ends of chromosomes, called the telomeres, and so on. This is not like the transcontinental railroad, where at some point someone is going to nail the golden spike, and then and only then can you go cross-country. There is no golden nucleotide to be nailed into the double helix at the end....
The genome is a very elaborate program, and we don’t know how to read it. It’s as if we have some ancient computer code that was written...years ago and now we are trying to figure out what it does. I think what biologists are going to be doing for the next decade is figuring out the circuitry of the genome by monitoring how the 50,000 to 100,000 genes are turned on and off and how all the proteins come on and off in the cell (see Regalado, 2000, 103[4]:97-98).
The following report from Time accurately expressed Dr. Lander’s point.
HGP scientists may have decoded 97% of the genome’s letters—the remaining 3% are generally considered unsequenceable and irrelevant—but they know the order of only 53% of them. It’s as if they’ve got the pages in the so-called book of life in the proper order but with the letters on each page scrambled....
Celera, by contrast, has not only the pages but all the words and letters as well—though neither side can yet say what most of these words and letters mean.... [Craig] Venter points out that identifying the order of the letters in our genetic alphabet is just a first step. Still ahead for Celera as well as its competitors: the much more complicated task of telling what those letters mean, what they do and what can be done if the messages they spell out are in error—a prime cause of human disease and suffering (Golden and Lemonick, 2000, 156[1]:20-21).

“ERROR MESSAGES”—THOSE PESKY SNPs

As much as we might wish it were true, mapping the DNA sequence of a single human—or even many humans from populations around the world—will not produce an accurate map of a human genome. Why not? The reason has to do with what geneticists refer to as “single nucleotide polymorphisms” (known as SNPs—pronounced SNIPS). Although human DNA is “almost” the same from every person on Earth, it is not exactly the same. The fact is, there is an approximate 0.1% variation in the nucleotides that compose human DNA. Generally, such variation is caused by a single nucleotide—thus the name “single nucleotide” polymorphisms [poly—many, morphisms—forms]. The DNA being sequenced in the HGP actually is a composite of human tissue cell lines from several people. As Lemonick wrote in his Time article:
Scientists...are putting together databases of tissue samples to look for one-letter genetic differences.... Both the Human Genome Project and Celera are currently sequencing the genomes of many different people, of both sexes and all sorts of ethnic backgrounds, to get a better sense of where the SNPs are (2000, 156[1]:28).
Luigi Cavalli-Sforza, director of the Human Genome Diversity Project that is examining DNA samples from over 400 populations worldwide, has explained why accurate knowledge of SNPs is critical.
If we take the DNA from one sperm (or egg) and compare it to the DNA of another random one, we find that there is on average one different nucleotide pair every thousand nucleotide pairs. There are therefore at least three million differences between the DNA in one sperm or egg and the DNA in another. All these differences originated by mutation, a spontaneous error made while copying DNA, which most frequently involves the replacement of one nucleotide by another of the four.... New mutations are therefore transmitted from parents to children.... A change in DNA may cause a change in a protein... (2000, pp. 68,17, emp. added).
And a change in a protein within a living system can herald severe problems. Organisms contain thousands of proteins that most often are composed of 300 or more amino acids linked together in chain-like fashion. Substitution of even a single amino acid at a critical position can be lethal (see Roth, 1998, p. 69; Radman, 1988, 259[2]:40-46). In an article in Nature titled “The Book of Genes,” Peter Little explained why SNPs are so important within the context of the Human Genome Project.
There is a general consensus that SNPs are probably the cause of most common genetic disorders. We all carry many SNPs but if we are unlucky enough to carry the “wrong” set of changes, we are predisposed to one or other of the common disorders with a genetic component such as diabetes, heart disease, asthma, or cancers.... If knowledge of gene differences can be combined with an understanding of the richness of environmental influences, we will have the key to unlocking the cause of most of the common disorders that kill or otherwise cause suffering (1999, 402:467-468).
After reading, digesting, and pondering all of this information about the Human Genome Project, perhaps it will be easier to understand in a clearer fashion why writers like Newsweek’s Thomas Hayden have concluded:
Meanwhile, the benefits of genomic research—from predicting risk for hereditary disease to developing new drugs designed for an individual’s genetic makeup—are still years away... (2000, 136[1]:51).
One scientist, Richard K. Wilson of Washington University (a partner in the public consortium of the Human Genome Project), plainly admitted in an interview in the July 2000 issue of Scientific American:

For a long time, there was a big misconception that when the DNA sequencing was done, we’d have total enlightenment about who we are, why we get sick and why we get old. Well, total enlightenment is decades away (as quoted in Brown, 2000, 283[1]:50).
Maybe so. Nevertheless, that does not detract in any way from the success the Human Genome Project already has enjoyed.

CONCLUSION

Carl Sagan, one of the most visible popularizers of science in our generation, once observed:
...[T]he future holds the promise that man will be able to assemble nucleotides in any desired sequence to produce whatever characteristics of human beings are thought desirable, an awesome and disquieting prospect (1997, 22:967, emp. added).
Yes, it is indeed an “awesome and disquieting prospect.” Henry Greely, a medical bioethicist at Stanford University, commented on where this kind of thinking may lead when he wrote: “The problem is, we sanctify DNA. People seem to want to be eager to view their genome as their essence, instead of just molecules that pass on certain traits. In our secular culture, it’s almost taken the place of the soul” (as quoted in Kloehn and Salopek, 1997, p. C-1).
During an interview with Stanford geneticist David Cox for the August 14, 2000 issue of People magazine, reporter Giovanna Breu remarked: “Some worry that mapping the genome allows us to play God by manipulating life.” Dr. Cox, however, responded:
The genome gives us a list of what living things are made up of, but not how they go together and work. It provides one more piece of information that we can start using to make order out of our ignorance and help people to make better decisions in life. But...we just have the parts, not the entire instruction manual. I think God isn’t so stupid as to let anyone have that (2000, 54[7]:131).
While I, personally, might not have phrased my sentiments in exactly those words, it certainly is invigorating to see a scientist of Dr. Cox’s stature give credit where credit is due—to God—for the creation of the “book of life” to which we refer somewhat nonchalantly as the “human genome.” And it similarly is refreshing to be able to report that he is not the only scientist involved in the project who has acknowledged God as the Author of the intricate genetic code. At the June 26 press conference held jointly by the President of the United States and the Prime Minister of Great Britain, Dr. Francis Collins, who chairs the Human Genome Project from the National Institutes of Health, spoke in similar terms when he said:
Today, we deliver, ahead of schedule again, the most visible and spectacular milestone of all.... We have developed a map of overlapping fragments that includes 97 percent of the human genome, and we have sequenced 85 percent of this.... It’s a happy day for the world. It is humbling for me and awe-inspiring to realize that we have caught the first glimpse of our own instruction book, previously known only to God. What a profound responsibility it is to do this work (see Office of Technology Policy, 2000, emp. added). [NOTE: In an interview that appeared in the March issue of Discover magazine three months earlier, Dr. Collins publicly affirmed his personal faith in the God of the Bible, and commented on how grateful he was to be associated with the HGP as it uncovered some of the “mysteries of human biology”—see Glausiusz, 2000, 21[3]:22.]
A profound responsibility indeed! To actually be able to “peek inside” the biochemical code—“whose Builder and Maker is God”—is indeed “humbling and awe-inspiring.” And—regardless of how deep we probe or how intelligent we think we are—may it ever be so!

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